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IDSCO4325 TypeCDS
From3930067 nt length384
To3929684 aa length127
GenecspB pI7.54
DefinitioncspB cold shock protein B M.W (Da)13525
NoteSCD12A.08 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3907 putative cold shock protein2297.0e-62
sgrSGR_3176 putative cold shock protein2382.0e-64
samSAM23877_3380 Cold shock protein CspC2523.0e-89
scabSCAB50821 putative cold shock protein2381.0e-64
saceSACE_0594 cold-shock DNA-binding domain protein1367.0e-34
nfarnfa6390 putative cold shock protein1367.0e-34

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-6172.71.5e-20

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974650.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 5627.5e-73
WP_161163330.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 5611.2e-72
WP_053132946.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 5591.9e-72
WP_189233933.1 MULTISPECIES: cold-shock protein [Streptomyces] >dbj 5582.8e-72
WP_215174546.1 cold shock domain-containing protein [Streptomyces sp. ISL-1... 5574.2e-72
5566.0e-72
WP_077798017.1 cold-shock protein [Streptomyces sp. JHA26] 5566.6e-72
WP_217171303.1 cold shock domain-containing protein [Streptomyces sp. AC512... 5566.8e-72
WP_062725350.1 cold-shock protein [Streptomyces caeruleatus] >gb 5566.8e-72
WP_073729623.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 5557.8e-72

PSORT result

LocalizationCertaintyPSORT said
Not Clear