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IDSCO4369 TypeCDS
From3883925 nt length1623
To3882303 aa length540
Gene pI3.88
Definitionhypothetical protein M.W (Da)54031
NoteSCD10.01 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3789 putative integrin-like protein1467.0e-36
scabSCAB42601 putative integrin-like protein1272.0e-30

*avm, Streptomyces avermitilis; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

FG-GAP2FG-GAP repeat95-124, 403-436111.11.6e-32

VCBS1Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella98-17765.93.2e-18

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
MYU43889.1 VCBS repeat-containing protein [Streptomyces sp. SID7813] >gb 17560.0e+00
WP_210985104.1 integrin alpha [Streptomyces sp. RK76] >lcl 16590.0e+00
WP_161270154.1 integrin alpha [Streptomyces coelicolor] >gb 16560.0e+00
WP_162495215.1 MULTISPECIES: VCBS repeat-containing protein [unclassified S... 16550.0e+00
WP_191849924.1 VCBS repeat-containing protein [Streptomyces anthocyanicus] ... 16550.0e+00
WP_202493475.1 MULTISPECIES: integrin alpha [Streptomyces] 16540.0e+00
WP_030867196.1 VCBS repeat-containing protein [Streptomyces violaceoruber] 16520.0e+00
WP_168715189.1 MULTISPECIES: VCBS repeat-containing protein [Streptomyces] ... 16510.0e+00
16470.0e+00
WP_003974613.1 MULTISPECIES: VCBS repeat-containing protein [Streptomyces] ... 16440.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear