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IDSCO4409 TypeCDS
From3839550 nt length594
To3840143 aa length197
Gene pI9.98
Definitionputative RNA polymerase sigma factor M.W (Da)21874
NoteSC6F11.07c AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3844 putative RNA polymerase ECF-subfamily sigma factor2484.0e-67
sgrSGR_3060 putative RNA polymerase ECF-subfamily sigma factor1623.0e-41
samSAM23877_3326 RNA polymerase sigma factor3092.0e-109
scabSCAB51521 putative RNA polymerase sigma factor2782.0e-76

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9444.68e-12

Sigma70_r4_21Sigma-70, region 4127-17328.58.3e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974573.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7972.1e-106
WP_109035474.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 7954.3e-106
WP_189746021.1 sigma-70 family RNA polymerase sigma factor [Streptomyces te... 7702.2e-102
WP_059301172.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7685.5e-102
WP_159328766.1 sigma-70 family RNA polymerase sigma factor [Streptomyces te... 7677.5e-102
WP_134654814.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 7661.0e-101
WP_030186140.1 sigma-70 family RNA polymerase sigma factor [Streptomyces vi... 7651.4e-101
WP_087808767.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7651.6e-101
WP_115743509.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7651.7e-101
WP_061444150.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7642.2e-101

PSORT result

LocalizationCertaintyPSORT said
Not Clear