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IDSCO4452 TypeCDS
From3791992 nt length1152
To3793143 aa length383
Gene pI6.74
Definitionhypothetical protein M.W (Da)41557
NoteSCD6.30c AseI frg.D
SignalP v.4.0Non-secretory protein | plot Categorysimilar to unknown proteins


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_961 putative RNA polymerase ECF-subfamily sigma factor5247.0e-150
sgrSGR_6932 putative RNA polymerase ECF-subfamily sigma factor5701.0e-163
samSAM23877_0654 hypothetical protein5730.0e+00
scabSCAB87051 putative RNA polymerase ECF-subfamily sigma factor5708.0e-164
saceSACE_6258 RNA polymerase sigma factor5162.0e-147
nfarnfa28080 putative sigma factor4345.0e-123

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 25-6838.85.1e-10

Sigma70_r4_21Sigma-70, region 498-14833.62.1e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_189284548.1 RNA polymerase subunit sigma-24 [Streptomyces anthocyanicus]... 14350.0e+00
WP_016326925.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 14350.0e+00
WP_136208686.1 MULTISPECIES: RNA polymerase subunit sigma-24 [unclassified ... 14340.0e+00
WP_011029664.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 14330.0e+00
WP_106517071.1 RNA polymerase subunit sigma-24 [Streptomyces sp. 111WW2] >g... 14320.0e+00
WP_191849880.1 RNA polymerase subunit sigma-24 [Streptomyces anthocyanicus]... 14280.0e+00
WP_121712356.1 RNA polymerase subunit sigma-24 [Streptomyces sp. E5N91] 14120.0e+00
WP_087790586.1 RNA polymerase subunit sigma-24 [Streptomyces sp. CS159] >gb... 13740.0e+00
WP_164248492.1 RNA polymerase subunit sigma-24 [Streptomyces coelicoflavus]... 13740.0e+00
WP_108989349.1 RNA polymerase subunit sigma-24 [Streptomyces coelicoflavus] 13720.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear