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IDSCO4505 TypeCDS
From3741555 nt length204
To3741758 aa length67
GenescoF2 pI4.48
DefinitionscoF2 cold shock protein M.W (Da)7187
NoteSCD35.12c AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4820 putative cold shock protein1172.0e-28
sgrSGR_3002 putative cold shock protein1297.0e-32
samSAM23877_4323 cold shock protein-like protein1371.0e-45
scabSCAB38231 putative cold shock protein1358.0e-34
saceSACE_2658 cold-shock DNA-binding domain protein1029.0e-24

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-66110.13e-32

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974443.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3468.6e-42
WP_053654525.1 cold-shock protein [Streptomyces sp. MMG1121] >gb 3423.2e-41
WP_003992177.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3423.7e-41
WP_004984723.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3414.7e-41
WP_007490911.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3415.4e-41
WP_073499902.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3415.4e-41
WP_069779342.1 cold-shock protein [Streptomyces fodineus] >gb 3415.4e-41
WP_030145317.1 cold-shock protein [Streptomyces violaceorubidus] 3398.5e-41
WP_189860865.1 cold-shock protein [Streptomyces poonensis] >dbj 3399.5e-41
WP_030379745.1 MULTISPECIES: cold-shock protein [unclassified Streptomyces]... 3391.1e-40

PSORT result

LocalizationCertaintyPSORT said
Not Clear