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IDSCO4866 TypeCDS
From3373109 nt length663
To3372447 aa length220
Gene pI6.15
Definitionputative ECF sigma factor M.W (Da)23565
NoteSCK20.07 AseI frg.O
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3385 putative RNA polymerase ECF-subfamily sigma factor3085.0e-85
sgrSGR_2673 putative RNA polymerase ECF-subfamily sigma factor3113.0e-86
samSAM23877_4684 ECF sigma factor4092.0e-148
scabSCAB35181 putative RNA polymerase sigma factor3609.0e-101

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 227-9365.32.8e-18

Sigma70_r4_21Sigma-70, region 4128-17643.41.8e-11

Sigma70_ECF1ECF sigma factor7-16126.83.7e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974105.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 11042.0e-152
WP_202493567.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 10953.7e-151
WP_109034422.1 RNA polymerase sigma factor [Streptomyces rubrogriseus] >gb 10851.2e-149
WP_226025773.1 RNA polymerase sigma factor [Streptomyces hyderabadensis] 10851.5e-149
WP_159323989.1 RNA polymerase sigma factor [Streptomyces tendae] >dbj 10832.6e-149
WP_127896971.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 10809.5e-149
WP_203697410.1 RNA polymerase sigma factor [Streptomyces rubrogriseus] 10772.6e-148
WP_087807622.1 RNA polymerase sigma factor [Streptomyces sp. CS113] >gb 10763.6e-148
WP_167307878.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 10712.0e-147
WP_030145612.1 RNA polymerase sigma factor [Streptomyces violaceorubidus] 10702.7e-147

PSORT result

LocalizationCertaintyPSORT said
Not Clear