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IDSCO4938 TypeCDS
From3294490 nt length915
To3293576 aa length304
Gene pI10.02
Definitionputative ECF-sigma factor M.W (Da)33368
NoteSCK13.30 AseI frg.K
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
samSAM23877_7152 putative sigma factor3349.0e-116
nfarnfa27380 putative sigma factor3262.0e-90

*sam, Streptomyces ambofaciens ATCC 23877; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 211-7456.81.2e-15

Sigma70_r4_21Sigma-70, region 4120-16932.06.6e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011029962.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 14890.0e+00
WP_003974035.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 14840.0e+00
WP_210983862.1 RNA polymerase sigma factor SigJ [Streptomyces sp. RK76] >lc... 14770.0e+00
WP_191850641.1 RNA polymerase sigma factor SigJ [Streptomyces anthocyanicus... 14730.0e+00
WP_136209501.1 RNA polymerase sigma factor SigJ [Streptomyces sp. LRa12] >l... 14730.0e+00
WP_093456873.1 MULTISPECIES: RNA polymerase sigma factor SigJ [unclassified... 14730.0e+00
WP_189738262.1 RNA polymerase sigma factor SigJ [Streptomyces tendae] >dbj 14410.0e+00
WP_106518692.1 RNA polymerase sigma factor SigJ [Streptomyces sp. 111WW2] >... 14380.0e+00
WP_159324054.1 RNA polymerase sigma factor SigJ [Streptomyces tendae] 14360.0e+00
WP_164142362.1 RNA polymerase sigma factor SigJ [Streptomyces coelicoflavus... 14290.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear