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IDSCO4944 TypeCDS
From3288778 nt length876
To3289653 aa length291
Gene pI9.51
Definitionputative DNA-binding protein M.W (Da)32891
Note2SCK31.04c AseI frg.K
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3315 putative DNA-binding protein4222.0e-119
sgrSGR_6891 putative transcriptional regulator4214.0e-119
samSAM23877_4766 DNA-binding protein5430.0e+00
scabSCAB34431 putative DNA-binding protein4244.0e-120
saceSACE_1844 transcriptional regulator, XRE family2962.0e-81

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HTH_311Helix-turn-helix domain10-9063.81.3e-17

HTH_31Helix-turn-helix40-8337.41.7e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
13950.0e+00
WP_011029967.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 13940.0e+00
WP_037897841.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 13930.0e+00
WP_102931908.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 13890.0e+00
WP_093456875.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 13850.0e+00
EOY49926.1 putative DNA-binding protein [Streptomyces lividans 1326] >gb 13840.0e+00
WP_046247746.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 13840.0e+00
EFD67100.1 DNA-binding protein [Streptomyces lividans TK24] 13840.0e+00
WP_127894191.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 13830.0e+00
WP_197924014.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 13820.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear