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IDSCO5216 TypeCDS
From2992289 nt length684
To2991606 aa length227
GenesigR pI5.06
DefinitionsigR RNA polymerase sigma factor M.W (Da)25186
NoteSC7E4.13 AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3038 putative RNA polymerase ECF-subfamily sigma factor3947.0e-111
sgrSGR_2306 putative RNA polymerase ECF-subfamily sigma factor3845.0e-108
samSAM23877_5004 RNA polymerase sigma factor4657.0e-169
scabSCAB30381 putative RNA polymerase ECF-subfamily sigma factor4422.0e-125
saceSACE_6430 RNA polymerase sigma factor2514.0e-68
nfarnfa45840 putative sigma factor2576.0e-70

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 243-10665.82e-18

Sigma70_r4_21Sigma-70, region 4148-19852.03.7e-14

Sigma70_r41Sigma-70, region 4151-19934.41e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003973756.1 MULTISPECIES: RNA polymerase sigma factor SigR [Streptomyces... 11962.7e-166
WP_167343935.1 MULTISPECIES: RNA polymerase sigma factor SigR [Streptomyces... 11946.5e-166
WP_217246507.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 11946.6e-166
WP_030400662.1 MULTISPECIES: RNA polymerase sigma factor SigR [Streptomyces... 11946.8e-166
WP_059300664.1 MULTISPECIES: RNA polymerase sigma factor SigR [Streptomyces... 11938.1e-166
WP_188183311.1 RNA polymerase sigma factor SigR [Streptomyces sp. A108] >lc... 11938.6e-166
WP_121749131.1 MULTISPECIES: RNA polymerase sigma factor SigR [unclassified... 11921.3e-165
WP_102928304.1 MULTISPECIES: RNA polymerase sigma factor SigR [Streptomyces... 11921.3e-165
MYS76981.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 11921.3e-165
WP_077796522.1 RNA polymerase sigma factor SigR [Streptomyces sp. JHA26] 11911.7e-165

PSORT result

LocalizationCertaintyPSORT said
Not Clear