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IDSCO5593 TypeCDS
From2569544 nt length567
To2568978 aa length188
Gene pI4.03
Definitionhypothetical protein M.W (Da)20219
NoteSC2E1.10 AseI frg.B
SignalP v.4.0Non-secretory protein | plot Categorysimilar to unknown proteins

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2642 putative 16S rRNA processing protein2691.0e-73
sgrSGR_1887 putative 16S rRNA processing protein2761.0e-75
samSAM23877_5349 Ribosome maturation factor RimM3391.0e-121
scabSCAB26171 putative 16S rRNA processing protein3144.0e-87
saceSACE_6051 16S rRNA processing protein1347.0e-33
nfarnfa41550 putative 16S rRNA processing protein1183.0e-28

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RimM1RimM N-terminal domain5-8380.01e-22

PRC1PRC-barrel domain93-16644.89.2e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_136207673.1 ribosome maturation factor RimM [Streptomyces sp. LRa12] >lc... 7622.4e-101
WP_191851436.1 ribosome maturation factor RimM [Streptomyces anthocyanicus]... 7612.7e-101
WP_003973400.1 MULTISPECIES: ribosome maturation factor RimM [Streptomyces]... 7613.4e-101
WP_109036067.1 ribosome maturation factor RimM [Streptomyces rubrogriseus] 7606.0e-101
NEC32147.1 ribosome maturation factor RimM [Streptomyces rubrogriseus] 7596.6e-101
WP_121710309.1 ribosome maturation factor RimM [Streptomyces sp. E5N91] 7561.9e-100
WP_159329351.1 ribosome maturation factor RimM [Streptomyces tendae] 7528.2e-100
WP_189749153.1 ribosome maturation factor RimM [Streptomyces tendae] >dbj 7511.1e-99
WP_115744410.1 ribosome maturation factor RimM [Streptomyces sp. CB09001] >... 7482.5e-99
MYS71178.1 ribosome maturation factor RimM [Streptomyces sp. SID5926] 7483.3e-99

PSORT result

LocalizationCertaintyPSORT said
Not Clear