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IDSCO5621 TypeCDS
From2546465 nt length843
To2545623 aa length280
GenewhiG pI5.48
DefinitionRNA polymerase sigma factor WhiG M.W (Da)30917
NoteSC2E1.38 AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2630 putative RNA polymerase sigma factor5015.0e-143
sgrSGR_1866 putative RNA polymerase sigma factor WhiG5191.0e-148
samSAM23877_5361 RNA polymerase sigma factor WhiG5530.0e+00
scabSCAB26051 putative RNA polymerase sigma factor4921.0e-140
saceSACE_6040 putative RNA polymerase sigma factor2546.0e-69

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4224-27368.32.6e-19

Sigma70_r21Sigma-70 region 250-12257.19.9e-16

Sigma70_r4_21Sigma-70, region 4218-26141.95.2e-11

Sigma70_r31Sigma-70 region 3130-21034.11.9e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003973389.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12533.9e-173
MYS69027.1 RNA polymerase sigma factor WhiG [Streptomyces sp. SID5926] 12481.9e-172
WP_055421734.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12472.5e-172
WP_193487171.1 RNA polymerase sigma factor WhiG [Streptomyces anthocyanicus... 12473.2e-172
WP_115744419.1 RNA polymerase sigma factor WhiG [Streptomyces sp. CB09001] ... 12455.1e-172
WP_121749405.1 RNA polymerase sigma factor WhiG [Streptomyces sp. E2N166] 12431.1e-171
WP_122615159.1 MULTISPECIES: RNA polymerase sigma factor WhiG [unclassified... 12431.3e-171
WP_029394084.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12431.4e-171
WP_109036050.1 RNA polymerase sigma factor WhiG [Streptomyces rubrogriseus]... 12421.5e-171
WP_061442316.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12421.8e-171

PSORT result

LocalizationCertaintyPSORT said
Not Clear