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IDSCO5934 TypeCDS
From2163358 nt length603
To2162756 aa length200
Gene pI11.14
Definitionputative sigma factor M.W (Da)22640
NoteSC7H1.04 AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3888 putative RNA polymerase ECF-subfamily sigma factor1224.0e-29
sgrSGR_1634 putative RNA polymerase ECF-subfamily sigma factor1354.0e-33
samSAM23877_0594 putative RNA polymerase ECF-subfamily sigma factor1151.0e-32
scabSCAB52551 putative RNA polymerase sigma factor1324.0e-32

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4123-17458.24.3e-16

Sigma70_r21Sigma-70 region 222-8937.99.9e-10

Sigma70_r41Sigma-70, region 4127-17436.91.7e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
MYU45453.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 7512.7e-99
WP_003973087.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7471.5e-98
WP_193783551.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7445.4e-98
MYS77000.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 7331.5e-96
WP_164277449.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 7306.6e-96
WP_104631266.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7237.1e-95
WP_100578977.1 RNA polymerase sigma factor [Streptomyces sp. CB01201] >lcl 7062.8e-92
WP_030179518.1 sigma-70 family RNA polymerase sigma factor [Streptomyces vi... 7038.0e-92
WP_059298108.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7039.1e-92
WP_087806734.1 RNA polymerase sigma factor [Streptomyces sp. CS113] >gb 7002.1e-91

PSORT result

LocalizationCertaintyPSORT said
Not Clear