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IDSCO6439 TypeCDS
From1544604 nt length489
To1545092 aa length162
Gene pI4.61
Definitionputative DNA binding protein M.W (Da)17913
NoteSC9B5.06c AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
samSAM23877_7103 putative DNA-binding protein1293.0e-39
saceSACE_1965 putative DNA binding protein1176.0e-28
nfarnfa25610 putative cold shock protein1005.0e-23

*sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain23-8452.82.4e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011030920.1 MULTISPECIES: cold shock domain-containing protein [Streptom... 8343.1e-113
WP_003972539.1 MULTISPECIES: cold shock domain-containing protein [Streptom... 8317.9e-113
WP_121715257.1 cold shock domain-containing protein [Streptomyces sp. E5N91... 8195.8e-111
PSK57385.1 Cold shock-like protein [Streptomyces sp. 111WW2] >lcl 7291.9e-97
EOY51490.1 DNA-binding protein [Streptomyces lividans 1326] >gb 7265.0e-97
WP_076972778.1 cold shock domain-containing protein [Streptomyces sp. M1013... 6963.3e-92
WP_189742937.1 cold shock domain-containing protein [Streptomyces tendae] >... 6692.1e-88
WP_201301540.1 cold shock domain-containing protein [Streptomyces tendae] 6674.2e-88
WP_226026754.1 cold shock domain-containing protein [Streptomyces hyderabad... 6631.8e-87
WP_104630188.1 cold shock domain-containing protein [Streptomyces sp. MH60]... 6622.8e-87

PSORT result

LocalizationCertaintyPSORT said
Not Clear