| ID | SGR_1901
| Type | CDS
|
| From | 2256046
| nt length | 3708
|
| To | 2252339
| aa length | 1235
|
| Gene | smc
| pI | 5.01
|
| Definition | putative chromosome segregation protein
| M.W (Da) | 133189
|
| Note |
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_2658 putative chromosome segregation protein | 1385 | 0.0e+00
|
| coel | SCO5577 putative chromosome associated protein | 1661 | 0.0e+00
|
| sam | SAM23877_5332 Chromosome partition protein Smc | 1666 | 0.0e+00
|
| kan | CP970_12265 chromosome segregation protein SMC | 1634 | 0.0e+00
|
| scab | SCAB26331 putative chromosome segregation protein | 1682 | 0.0e+00
|
| sace | SACE_6071 chromosome segregation ATPase | 1037 | 0.0e+00
|
| nfar | nfa41670 putative chromosome segregation protein | 993 | 0.0e+00
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SMC_N | 1 | RecF/RecN/SMC N terminal domain | 3-1227 | 242.3 | 3.5e-72
|
| SMC_hinge | 1 | SMC proteins Flexible Hinge Domain | 513-674 | 74.5 | 7.3e-21
|
| AAA_21 | 2 | AAA domain, putative AbiEii toxin, Type IV TA system | 26-83, 1142-1206 | 63.4 | 2.8e-17
|
| AAA_23 | 1 | AAA domain | 6-201 | 53.2 | 4.8e-14
|
| AAA_15 | 1 | AAA ATPase domain | 1-49 | 51.3 | 1.2e-13
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|