SGR_2306

ID SGR_2306 Type CDS
From 2726317 nt length 657
To 2725661 aa length 218
Gene sig22 pI 5.19
Definition putative RNA polymerase ECF-subfamily sigma factor M.W (Da) 24228
Note AseI frg. A
SignalP v.4.0 Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*	Reciprocally best hit to	Score	E-value
avm	SAVERM_3038 putative RNA polymerase ECF-subfamily sigma factor	356	1.0e-99
coel	SCO5216 sigR RNA polymerase sigma factor	402	2.0e-113
sam	SAM23877_5004 RNA polymerase sigma factor	386	6.0e-138
kan	CP970_14450 sigma-70 family RNA polymerase sigma factor	400	1.0e-143
scab	SCAB30381 putative RNA polymerase ECF-subfamily sigma factor	405	2.0e-114
sace	SACE_6430 RNA polymerase sigma factor	281	4.0e-77
nfar	nfa45840 putative sigma factor	289	2.0e-79

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result

Model No. Description Position (aa) Score E-value

Sigma70_r2 1 Sigma-70 region 2 35-97 63.3 1.1e-17

Sigma70_r4_2 1 Sigma-70, region 4 140-189 51.0 7.5e-14

Sigma70_r4 1 Sigma-70, region 4 142-190 34.5 9.7e-09

BLAST search result (top 10 hits)

ID Description Score E-value
WP_219818905.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1035 4.6e-142
WP_007458152.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1034 7.7e-142
WP_012379111.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1034 8.3e-142
WP_030113626.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1031 1.9e-141
WP_205063251.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1030 3.0e-141
WP_204164302.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1030 3.0e-141
WP_065488590.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1029 4.1e-141
WP_203608427.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 1029 4.2e-141
WP_202464565.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1029 4.3e-141
WP_010061546.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1028 6.2e-141

PSORT result

Localization Certainty PSORT said
Not Clear

ID	SGR_2306	Type	CDS
From	2726317	nt length	657
To	2725661	aa length	218
Gene	sig22	pI	5.19
Definition	putative RNA polymerase ECF-subfamily sigma factor	M.W (Da)	24228
Note		AseI frg.	A
SignalP v.4.0	Non-secretory protein \| plot	Category

Model	No.	Description	Position (aa)	Score	E-value
Sigma70_r2	1	Sigma-70 region 2	35-97	63.3	1.1e-17
Sigma70_r4_2	1	Sigma-70, region 4	140-189	51.0	7.5e-14
Sigma70_r4	1	Sigma-70, region 4	142-190	34.5	9.7e-09