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IDSGR_2646 TypeCDS
From3126809 nt length1029
To3127837 aa length342
Genesig26 pI4.65
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)36745
Note AseI frg.E
SignalP v.4.0Signal peptide | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3363 putative RNA polymerase ECF-subfamily sigma factor4916.0e-140
coelSCO4895 putative ECF sigma factor5277.0e-151
samSAM23877_4717 ECF RNA polymerase sigma factor SigG5270.0e+00
kanCP970_16155 sigma-70 family RNA polymerase sigma factor4997.0e-180
scabSCAB34911 putative RNA polymerase sigma factor5162.0e-147
nfarnfa5260 putative sigma factor3331.0e-92

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9168.72.4e-19

Sigma70_r4_21Sigma-70, region 4148-20058.43.7e-16

SnoaL_21SnoaL-like domain223-31734.03.2e-08

Sigma70_r41Sigma-70, region 4153-20025.94.7e-06

NTF21Nuclear transport factor 2 (NTF2) domain220-27926.85.5e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012379349.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 16860.0e+00
WP_164362479.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gr... 16820.0e+00
WP_003966777.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 16800.0e+00
WP_093684199.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 16720.0e+00
WP_093563209.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16690.0e+00
WP_010071905.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 16350.0e+00
WP_164202278.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pa... 16350.0e+00
MYV59839.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 16340.0e+00
WP_093812168.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16340.0e+00
WP_175514407.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16340.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear