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IDSGR_2758 TypeCDS
From3270978 nt length576
To3270403 aa length191
Genesig44 pI6.72
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20792
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4999 putative RNA polymerase ECF-subfamily sigma factor3231.0e-89
coelSCO4769 ECF sigma factor3537.0e-99
samSAM23877_4583 ECF RNA polymerase sigma factor SigD3556.0e-128
kanCP970_17025 sigma-70 family RNA polymerase sigma factor3659.0e-132
scabSCAB36221 putative RNA polymerase sigma factor3708.0e-104
saceSACE_6711 RNA polymerase sigma factor1547.0e-39
nfarnfa8920 putative sigma factor1553.0e-39

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4138-18748.54e-13

Sigma70_r4_21Sigma-70, region 4137-18544.86.4e-12

Sigma70_r21Sigma-70 region 227-9839.92.4e-10

Sigma70_ECF1ECF sigma factor10-17532.56.8e-08

HTH_161Helix-turn-helix domain12-7324.12.5e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003966888.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9843.6e-135
WP_093893485.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9801.5e-134
WP_030084428.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9801.5e-134
WP_219205430.1 RNA polymerase sigma factor ShbA [Streptomyces griseus] >lcl... 9801.8e-134
WP_047178337.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9792.1e-134
WP_018101160.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 9766.8e-134
WP_124716891.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9767.1e-134
WP_018960265.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9767.5e-134
WP_148838753.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9758.7e-134
SCF56698.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces sp. ... 9789.4e-134

PSORT result

LocalizationCertaintyPSORT said
Not Clear