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IDSGR_2792 TypeCDS
From3304056 nt length1287
To3302770 aa length428
Genesig16 pI6.12
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)45850
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4757 undefined product2651.0e-71
scabSCAB36341 putative RNA polymerase sigma factor2825.0e-77
saceSACE_6398 putative RNA polymerase, sigma-24 subunit, ECF subfamily3164.0e-87
nfarnfa18820 putative sigma factor3448.0e-96

*coel, Streptomyces coelicolor A3(2); scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 223-8734.89.2e-09

Sigma70_r4_21Sigma-70, region 4134-18231.77.9e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
SEE88591.1 RNA polymerase, sigma subunit, ECF family [Streptomyces griseus]... 14330.0e+00
WP_106431765.1 RNA polymerase subunit sigma-24 [Streptomyces griseus] 14270.0e+00
BAG19621.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces... 14260.0e+00
WP_202549594.1 RNA polymerase sigma factor [Streptomyces sp. SID7816] 14260.0e+00
SBV00753.1 RNA polymerase, sigma subunit, ECF family [Streptomyces sp. Mnat... 14230.0e+00
EGE42386.1 putative RNA polymerase, sigma-24 subunit, ECF subfamily [Strepto... 14210.0e+00
MYR09234.1 RNA polymerase sigma factor [Streptomyces sp. SID724] >gb 14210.0e+00
WP_202464560.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 14190.0e+00
WP_093684150.1 RNA polymerase subunit sigma-24 [Streptomyces sp. MnatMP-M77... 14180.0e+00
WP_202463968.1 RNA polymerase sigma factor [Streptomyces sp. SID8364] 14170.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear