-- | --

IDSGR_3002 TypeCDS
From3504556 nt length204
To3504759 aa length67
GenecspD3 pI4.45
Definitionputative cold shock protein M.W (Da)7031
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4820 putative cold shock protein1173.0e-28
coelSCO4505 scoF2 cold shock protein1297.0e-32
samSAM23877_4323 cold shock protein-like protein1293.0e-42
kanCP970_18245 cold-shock protein1301.0e-42
scabSCAB38231 putative cold shock protein1298.0e-32
saceSACE_2658 cold-shock DNA-binding domain protein1111.0e-26
nfarnfa42250 putative cold shock protein1059.0e-25

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-66107.61.9e-31

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
RLV68728.1 cold-shock DNA-binding domain-containing protein [Streptomyces sp... 3485.5e-42
WP_003967102.1 MULTISPECIES: cold-shock protein [Streptomycetaceae] >lcl 3476.0e-42
WP_219205522.1 cold shock domain-containing protein [Streptomyces griseus] ... 3451.0e-41
WP_008738468.1 MULTISPECIES: cold-shock protein [Streptomyces] >dbj 3451.2e-41
WP_030162033.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3451.4e-41
WP_132902898.1 cold-shock protein [Streptomyces sp. SID9727] >gb 3441.5e-41
WP_017948713.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3441.6e-41
WP_006347360.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3441.8e-41
WP_023587141.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3432.1e-41
WP_030012116.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3432.2e-41

PSORT result

LocalizationCertaintyPSORT said
Not Clear