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IDSGR_3060 TypeCDS
From3568428 nt length468
To3568895 aa length155
Genesig31 pI6.28
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)17200
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3844 putative RNA polymerase ECF-subfamily sigma factor1322.0e-32
coelSCO4409 putative RNA polymerase sigma factor1561.0e-39
samSAM23877_3326 RNA polymerase sigma factor1625.0e-52
kanCP970_24505 sigma-70 family RNA polymerase sigma factor1524.0e-48
scabSCAB51521 putative RNA polymerase sigma factor1552.0e-39

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 488-13428.48.8e-07

Sigma70_r21Sigma-70 region 24-5228.21.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
BAG19889.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces... 6599.5e-87
WP_219205581.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gr... 6611.1e-86
WP_003967160.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6593.5e-86
WP_050361137.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6402.7e-83
WP_057665100.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 6403.4e-83
WP_217229064.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 6403.6e-83
WP_215109745.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6379.9e-83
WP_073957997.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6361.2e-82
WP_087765418.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6351.5e-82
WP_047178132.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6324.8e-82

PSORT result

LocalizationCertaintyPSORT said
Not Clear