| ID | SGR_3176
| Type | CDS
|
| From | 3689792
| nt length | 384
|
| To | 3689409
| aa length | 127
|
| Gene | cspB1
| pI | 5.89
|
| Definition | putative cold shock protein
| M.W (Da) | 13382
|
| Note |
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_3907 putative cold shock protein | 225 | 1.0e-60
|
| coel | SCO4325 cspB cold shock protein B | 238 | 2.0e-64
|
| sam | SAM23877_3380 Cold shock protein CspC | 239 | 5.0e-84
|
| kan | CP970_24150 cold-shock protein | 243 | 2.0e-85
|
| scab | SCAB50821 putative cold shock protein | 236 | 5.0e-64
|
| sace | SACE_0594 cold-shock DNA-binding domain protein | 144 | 3.0e-36
|
| nfar | nfa6390 putative cold shock protein | 146 | 6.0e-37
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CSD | 1 | 'Cold-shock' DNA-binding domain | 3-63 | 73.3 | 9.2e-21
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|