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IDSGR_3226 TypeCDS
From3748153 nt length207
To3747947 aa length68
GenecspB2 pI4.58
Definitionputative cold shock protein M.W (Da)7371
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3932 putative cold shock protein1199.0e-29
coelSCO4295 scoF4 cold shock protein1342.0e-33
samSAM23877_3411 cold shock protein-like protein1342.0e-44
kanCP970_23935 cold-shock protein1381.0e-45
scabSCAB50421 putative cold shock protein1373.0e-34
nfarnfa3660 putative cold shock protein995.0e-23

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-64106.06e-31

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003967346.1 MULTISPECIES: cold-shock protein [Streptomycetaceae] >lcl 3511.6e-42
WP_189949539.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3502.2e-42
WP_030009783.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3493.7e-42
WP_046709519.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3483.8e-42
WP_173314580.1 cold-shock protein [Streptomyces fulvorobeus] >gb 3475.5e-42
WP_008743607.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3476.1e-42
WP_005315736.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3476.9e-42
WP_007382895.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3451.2e-41
WP_005486335.1 MULTISPECIES: cold-shock protein [Streptomycetaceae] >gb 3451.4e-41
WP_009716982.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3451.5e-41

PSORT result

LocalizationCertaintyPSORT said
Not Clear