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IDSGR_3370 TypeCDS
From3953586 nt length576
To3953011 aa length191
Genesig40 pI9.4
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20945
Note AseI frg.K
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4561 putative RNA polymerase ECF-subfamily sigma factor2876.0e-79
coelSCO3613 putative RNA polymerase sigma factor3306.0e-92
samSAM23877_4007 putative RNA polymerase sigma factor RfaY3357.0e-120
kanCP970_20190 SigE family RNA polymerase sigma factor3281.0e-116
scabSCAB41621 putative RNA polymerase sigma factor3282.0e-91
saceSACE_1517 RNA polymerase sigma factor1284.0e-31

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4130-18347.96.9e-13

Sigma70_r21Sigma-70 region 239-10343.22.2e-11

Sigma70_r41Sigma-70, region 4136-18442.92.3e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EGE42968.1 RNA polymerase, sigma-24 subunit, ECF subfamily [Streptomyces sp.... 8621.8e-116
WP_202463612.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8581.3e-115
WP_075025223.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8581.7e-115
WP_026237792.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8543.1e-115
QCW78274.1 SigE family RNA polymerase sigma factor [Streptomyces sp. S6] 8524.5e-115
WP_164614678.1 SigE family RNA polymerase sigma factor [Streptomyces sp. SI... 8524.8e-115
WP_215110294.1 SigE family RNA polymerase sigma factor [Streptomyces sp. Mc... 8538.6e-115
WP_217231614.1 SigE family RNA polymerase sigma factor [Streptomyces anulat... 8521.5e-114
WP_029181920.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8482.2e-114
WP_015609509.1 SigE family RNA polymerase sigma factor [Streptomyces sp. MB... 8482.4e-114

PSORT result

LocalizationCertaintyPSORT said
Not Clear