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IDSGR_3551 TypeCDS
From4155284 nt length879
To4156162 aa length292
GenesigF pI7.3
DefinitionRNA polymerase sigma factor, sigma F M.W (Da)32442
Note AseI frg.J
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4185 putative RNA polymerase sigma factor4414.0e-125
coelSCO4035 RNA polymerase sigma factor (fragment)4862.0e-138
samSAM23877_3649 RNA polymerase sigma-F factor5030.0e+00
kanCP970_22235 RNA polymerase sigma factor SigF5010.0e+00
scabSCAB47291 putative RNA polymerase sigma factor4853.0e-138

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 272-14168.13.7e-19

Sigma70_r41Sigma-70, region 4238-28562.71.5e-17

Sigma70_r31Sigma-70 region 3151-21457.21.2e-15

Sigma70_r4_21Sigma-70, region 4232-28443.81.4e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003967685.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12484.7e-172
WP_219205859.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 12442.4e-171
WP_030701271.1 RNA polymerase sigma factor SigF [Streptomyces griseus] 12372.1e-170
WP_097867826.1 RNA polymerase sigma factor SigF [Streptomyces sp. rh34] 12311.9e-169
WP_215111423.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 12276.8e-169
WP_097935604.1 MULTISPECIES: RNA polymerase sigma factor SigF [unclassified... 12207.9e-168
WP_047177539.1 MULTISPECIES: RNA polymerase sigma factor SigF [unclassified... 12191.1e-167
EHM31361.1 RNA polymerase sigma factor, sigma F [Streptomyces sp. W007] 12145.3e-167
WP_032789823.1 MULTISPECIES: RNA polymerase sigma factor SigF [unclassified... 12146.2e-167
WP_103535065.1 RNA polymerase sigma factor SigF [Streptomyces sp. SM11] 12146.2e-167

PSORT result

LocalizationCertaintyPSORT said
Not Clear