-- | --

IDSGR_3552 TypeCDS
From4156397 nt length867
To4157263 aa length288
GenesigL pI4.81
DefinitionRNA polymerase sigma factor, sigma L M.W (Da)31517
Note AseI frg.J
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4186 putative RNA polymerase sigma factor4362.0e-123
coelSCO4034 putative RNA polymerase sigma factor4814.0e-137
samSAM23877_3650 RNA polymerase sigma-F factor4786.0e-173
kanCP970_22230 RNA polymerase sigma factor SigF5030.0e+00
scabSCAB47281 putative RNA polymerase sigma factor4831.0e-137

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4234-28367.64.4e-19

Sigma70_r21Sigma-70 region 267-13664.07.1e-18

Sigma70_r31Sigma-70 region 3148-21344.51.1e-11

Sigma70_r4_21Sigma-70, region 4234-28137.21.6e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003967686.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13920.0e+00
WP_018958648.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13890.0e+00
BAC75680.1 sigma L [Streptomyces griseus] [Streptomyces griseus subsp. gris... 13880.0e+00
WP_030579030.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13880.0e+00
WP_010071444.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13870.0e+00
EFE76120.1 sigma L [Streptomyces filamentosus NRRL 15998] 13860.0e+00
WP_018489955.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13860.0e+00
WP_179182297.1 RNA polymerase sigma factor SigF [Streptomyces sp. CB04723] ... 13860.0e+00
WP_096626612.1 RNA polymerase sigma factor SigF [Streptomyces sp. WZ.A104] ... 13840.0e+00
WP_189518794.1 RNA polymerase sigma factor SigF [Streptomyces sindenensis] ... 13840.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear