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IDSGR_3571 TypeCDS
From4178779 nt length957
To4179735 aa length318
Gene pI5.75
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)34576
Note AseI frg.J
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
samSAM23877_0637 putative RNA polymerase ECF-subfamily sigma factor4662.0e-167
scabSCAB3921 putative RNA polymerase sigma factor4992.0e-142
saceSACE_1768 putative ECF-family RNA polymerase sigma factor2424.0e-65
nfarnfa52790 putative sigma factor2648.0e-72

*sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 214-7861.44.7e-17

Sigma70_r4_21Sigma-70, region 4115-16642.63.2e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EGE43153.1 RNA polymerase, sigma-24 subunit, ECF subfamily [Streptomyces sp.... 16610.0e+00
SBV07050.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces sp. ... 16510.0e+00
WP_042498524.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 16400.0e+00
WP_164362217.1 RNA polymerase sigma factor SigJ [Streptomyces griseus] >gb 16340.0e+00
WP_030701292.1 RNA polymerase sigma factor SigJ [Streptomyces griseus] 16300.0e+00
WP_093685208.1 MULTISPECIES: RNA polymerase sigma factor SigJ [unclassified... 16290.0e+00
WP_219205872.1 RNA polymerase sigma factor SigJ [Streptomyces griseus] >lcl... 16280.0e+00
WP_161186278.1 RNA polymerase sigma factor SigJ [Streptomyces sp. SID724] >... 16260.0e+00
WP_215109197.1 RNA polymerase sigma-70 factor [Streptomyces sp. McG3] >lcl 15630.0e+00
WP_164618242.1 RNA polymerase sigma factor SigJ [Streptomyces sp. SID14515]... 15510.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear