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IDSGR_3987 TypeCDS
From4673409 nt length489
To4673897 aa length162
Gene pI4.5
Definitionputative DNA-binding protein M.W (Da)17345
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4012 putative DNA-binding protein1708.0e-44
coelSCO4198 putative DNA-binding protein2137.0e-57
samSAM23877_3498 putative DNA-binding protein1865.0e-62
kanCP970_23505 helix-turn-helix domain-containing protein2252.0e-77
scabSCAB49841 putative DNA-binding protein2113.0e-56
saceSACE_6990 transcriptional regulator, XRE family1453.0e-36
nfarnfa52090 putative DNA-binding protein1374.0e-34

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HTH_31Helix-turn-helix13-6556.32.2e-15

HTH_311Helix-turn-helix domain9-6453.91.5e-14

HTH_191Helix-turn-helix domain10-6940.91.5e-10

HTH_251Helix-turn-helix domain12-6230.42.3e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003968159.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 5896.8e-76
WP_161184530.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 5896.8e-76
WP_219205994.1 helix-turn-helix domain-containing protein [Streptomyces gri... 5896.8e-76
WP_093564704.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 5896.8e-76
WP_093684264.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 5896.8e-76
WP_215111519.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 5628.4e-72
WP_097876404.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 5532.2e-70
WP_073746876.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 5522.5e-70
WP_010063578.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 5522.6e-70
WP_097868080.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 5522.7e-70

PSORT result

LocalizationCertaintyPSORT said
Not Clear