| ID | SGR_4129
| Type | CDS
|
| From | 4827604
| nt length | 1422
|
| To | 4826183
| aa length | 473
|
| Gene | radA
| pI | 8.38
|
| Definition | putative DNA repair protein
| M.W (Da) | 49721
|
| Note |
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_4710 putative DNA repair protein | 733 | 0.0e+00
|
| coel | SCO3351 putative DNA repair protein | 801 | 0.0e+00
|
| sam | SAM23877_4210 DNA repair protein RadA-like protein | 806 | 0.0e+00
|
| kan | CP970_18910 DNA repair protein RadA | 794 | 0.0e+00
|
| scab | SCAB39361 putative DNA repair protein | 808 | 0.0e+00
|
| sace | SACE_0436 DNA repair protein | 526 | 2.0e-150
|
| nfar | nfa4320 putative DNA repair protein | 476 | 2.0e-135
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ATPase | 1 | KaiC | 75-140 | 56.1 | 3e-15
|
| AAA_25 | 1 | AAA domain | 86-223 | 54.3 | 1.1e-14
|
| ChlI | 1 | Subunit ChlI of Mg-chelatase | 371-430 | 37.0 | 2.4e-09
|
| Lon_C | 1 | Lon protease (S16) C-terminal proteolytic domain | 367-431 | 29.9 | 3.4e-07
|
| AAA_22 | 1 | AAA domain | 94-197 | 30.2 | 4.1e-07
|
| DnaB_C | 1 | DnaB-like helicase C terminal domain | 75-138 | 28.2 | 9.5e-07
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|