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IDSGR_4307 TypeCDS
From5039950 nt length1512
To5041461 aa length503
Genesig20 pI5.66
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)52311
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2597 putative RNA polymerase ECF-subfamily sigma factor2464.0e-66
scabSCAB19951 putative RNA polymerase sigma factor3033.0e-83

*avm, Streptomyces avermitilis; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CAP1Cysteine-rich secretory protein family386-49856.35e-15

Sigma70_r21Sigma-70 region 224-8750.51.2e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_097921920.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 16250.0e+00
WP_097911582.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16210.0e+00
WP_210991854.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16090.0e+00
WP_069751882.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16080.0e+00
WP_210934038.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16070.0e+00
WP_217232272.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 16050.0e+00
WP_098896279.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16050.0e+00
NEB53179.1 sigma-70 family RNA polymerase sigma factor [Streptomyces griseus... 11361.1e-151
WP_141716190.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 11351.2e-151
SCE57357.1 RNA polymerase sigma factor, sigma-70 family, partial [Streptomy... 11325.4e-151

PSORT result

LocalizationCertaintyPSORT said
Not Clear