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IDSGR_5440 TypeCDS
From6396255 nt length3537
To6399791 aa length1178
GenednaE1 pI5.83
Definitionputative DNA polymerase III alpha subunit M.W (Da)130806
Note AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6143 putative DNA polymerase III alpha subunit22200.0e+00
coelSCO2064 putative DNA polymerase III alpha chain22020.0e+00
samSAM23877_2151 DNA polymerase III subunit alpha22040.0e+00
kanCP970_32370 DNA polymerase III subunit alpha22620.0e+00
scabSCAB68251 putative DNA polymerase III alpha subunit22140.0e+00
saceSACE_5815 DNA polymerase III alpha subunit12650.0e+00
nfarnfa18000 putative DNA polymerase III alpha subunit14280.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

DNA_pol3_alpha1Bacterial DNA polymerase III alpha subunit316-756549.15.3e-165

PHP1PHP domain8-194156.94.9e-46

HHH_61Helix-hairpin-helix motif829-91784.63.7e-24

tRNA_anti-codon1OB-fold nucleic acid binding domain1019-109831.89.8e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012381314.1 DNA polymerase III subunit alpha [Streptomyces griseus] >gb 62430.0e+00
MYR14632.1 DNA polymerase III subunit alpha [Streptomyces sp. SID724] 62400.0e+00
WP_003969728.1 MULTISPECIES: DNA polymerase III subunit alpha [Streptomyces... 62390.0e+00
WP_219206486.1 DNA polymerase III subunit alpha [Streptomyces griseus] >lcl... 62340.0e+00
WP_047176159.1 MULTISPECIES: DNA polymerase III subunit alpha [unclassified... 62270.0e+00
NEB87196.1 DNA polymerase III subunit alpha [Streptomyces anulatus] 62250.0e+00
WP_205082040.1 DNA polymerase III subunit alpha [Streptomyces sp. RHZ10] >l... 62110.0e+00
WP_098895639.1 MULTISPECIES: DNA polymerase III subunit alpha [unclassified... 62040.0e+00
WP_010057921.1 MULTISPECIES: DNA polymerase III subunit alpha [Streptomyces... 62040.0e+00
WP_030805789.1 DNA polymerase III subunit alpha [Streptomyces mediolani] 62030.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear