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IDSGR_5495 TypeCDS
From6457034 nt length204
To6457237 aa length67
GenecspD2 pI4.54
Definitionputative cold shock protein M.W (Da)7110
Note AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4447 putative cold shock protein1136.0e-27
coelSCO3748 f40 cold shock protein1298.0e-32
samSAM23877_3897 cold shock protein-like protein1293.0e-42
kanCP970_15650 cold-shock protein1323.0e-43
scabSCAB43471 putative cold shock protein1312.0e-32

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-65106.83.4e-31

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003969786.1 MULTISPECIES: cold-shock protein [Streptomycetaceae] >lcl 3469.0e-42
WP_137989992.1 cold-shock protein [Streptomyces exfoliatus] 3442.0e-41
WP_004985680.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3432.5e-41
WP_006126182.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3432.8e-41
WP_053661143.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3422.9e-41
WP_111583233.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3423.4e-41
WP_189825182.1 cold-shock protein [Streptomyces finlayi] >dbj 3423.5e-41
WP_205084521.1 cold-shock protein [Streptomyces sp. RHZ10] >lcl 3423.6e-41
WP_006134583.1 MULTISPECIES: cold-shock protein [Actinomycetia] >gb 3414.9e-41
WP_018489699.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3415.0e-41

PSORT result

LocalizationCertaintyPSORT said
Not Clear