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IDSGR_5532 TypeCDS
From6504158 nt length2502
To6501657 aa length833
Gene pI10.35
Definitionputative ATP-dependent RNA helicase M.W (Da)88705
Note AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6231 putative ATP-dependent RNA helicase9470.0e+00
coelSCO2000 putative ATP-binding RNA helicase6102.0e-175
samSAM23877_2083 ATP-dependent helicase HrpB10770.0e+00
kanCP970_32810 ATP-dependent helicase HrpB11050.0e+00
scabSCAB69041 putative ATP-dependent RNA helicase11540.0e+00
saceSACE_3130 ATP-dependent helicase HrpB7270.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HrpB_C1ATP-dependent helicase C-terminal686-817163.72.5e-48

HA21Helicase associated domain (HA2)403-46542.75.2e-11

Helicase_C1Helicase conserved C-terminal domain226-34040.52.6e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012381373.1 ATP-dependent helicase HrpB [Streptomyces griseus] >dbj 32310.0e+00
WP_003969824.1 ATP-dependent helicase HrpB [Streptomyces sp. ACT-1] >gb 32260.0e+00
WP_202549841.1 ATP-dependent helicase HrpB [Streptomyces sp. SID7816] 32260.0e+00
WP_093684902.1 ATP-dependent helicase HrpB [Streptomyces sp. MnatMP-M77] >g... 32260.0e+00
WP_030706369.1 ATP-dependent helicase HrpB [Streptomyces griseus] 32210.0e+00
WP_202463436.1 ATP-dependent helicase HrpB [Streptomyces sp. SID8364] 31940.0e+00
WP_202476752.1 ATP-dependent helicase HrpB [Streptomyces sp. SID4928] 31930.0e+00
WP_073867520.1 ATP-dependent helicase HrpB [Streptomyces sp. CB00072] >gb 30470.0e+00
WP_007447508.1 ATP-dependent helicase HrpB [Streptomyces sp. W007] >gb 30420.0e+00
WP_075347807.1 ATP-dependent helicase HrpB [Streptomyces sp. MNU77] >gb 30410.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear