| ID | SGR_5873
| Type | CDS
|
| From | 6873495
| nt length | 2841
|
| To | 6876335
| aa length | 946
|
| Gene | helY
| pI | 7.13
|
| Definition | putative ATP-dependent RNA helicase
| M.W (Da) | 105213
|
| Note |
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_6695 putative ATP-dependent RNA helicase | 1585 | 0.0e+00
|
| coel | SCO1631 putative helicase | 1645 | 0.0e+00
|
| sam | SAM23877_1686 putative helicase HelY | 1643 | 0.0e+00
|
| kan | CP970_35545 DEAD/DEAH box helicase | 1664 | 0.0e+00
|
| scab | SCAB73621 putative ATP-dependent RNA helicase | 1592 | 0.0e+00
|
| sace | SACE_2265 putative ATP-dependent RNA helicase | 1074 | 0.0e+00
|
| nfar | nfa31620 putative ATP-dependent RNA helicase | 979 | 0.0e+00
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DSHCT | 1 | DSHCT (NUC185) domain | 766-940 | 134.4 | 2.6e-39
|
| DEAD | 1 | DEAD/DEAH box helicase | 38-185 | 72.2 | 4e-20
|
| ResIII | 1 | Type III restriction enzyme, res subunit | 35-184 | 37.9 | 1.5e-09
|
| rRNA_proc-arch | 1 | rRNA-processing arch domain | 502-602 | 30.3 | 3.4e-07
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 367-446 | 22.9 | 7.8e-05
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|