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IDSGR_5884 TypeCDS
From6887427 nt length585
To6886843 aa length194
Genesig53 pI8.24
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)21473
Note AseI frg.I
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6582 putative RNA polymerase ECF-subfamily sigma factor2076.0e-55
coelSCO0632 putative RNA polymerase sigma factor2945.0e-81
samSAM23877_1778 ECF RNA polymerase sigma factor SigK2171.0e-73
kanCP970_19530 sigma-70 family RNA polymerase sigma factor2842.0e-99
scabSCAB10871 2769.0e-76
nfarnfa8890 putative sigma factor1606.0e-41

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 236-10152.92.1e-14

Sigma70_r4_21Sigma-70, region 4133-18647.21.2e-12

Sigma70_r41Sigma-70, region 4139-18842.43.4e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012381586.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8673.5e-117
WP_003970191.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8613.0e-116
WP_215106762.1 ECF RNA polymerase sigma factor SigK [Streptomyces sp. McG3]... 8586.8e-116
WP_030632341.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8587.1e-116
WP_030088295.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8589.4e-116
WP_086779546.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8542.8e-115
WP_010070219.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8527.2e-115
WP_205086827.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8527.2e-115
WP_047175805.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8511.1e-114
WP_097866969.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8501.2e-114

PSORT result

LocalizationCertaintyPSORT said
Not Clear