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IDSGR_5892 TypeCDS
From6896018 nt length546
To6896563 aa length181
Gene pI9.84
Definitionputative transcriptional regulator M.W (Da)19848
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6718 putative regulatory protein1939.0e-51
coelSCO1619 putative regulatory protein2092.0e-55
samSAM23877_1673 Regulatory protein2093.0e-70
kanCP970_35615 cupin domain-containing protein2372.0e-81
scabSCAB73791 putative regulatory protein2179.0e-58

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HTH_311Helix-turn-helix domain9-6342.27.1e-11

Cupin_21Cupin domain108-15937.71.1e-09

HTH_31Helix-turn-helix14-6437.22.1e-09

HTH_191Helix-turn-helix domain10-7233.23.8e-08

Cupin_31Protein of unknown function (DUF861)116-16029.34.3e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003970199.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 6231.7e-80
WP_073805710.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 6083.2e-78
WP_219206631.1 helix-turn-helix domain-containing protein, partial [Strepto... 6083.8e-78
WP_073870450.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 6032.1e-77
WP_097870723.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 6022.8e-77
WP_097936541.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 6023.5e-77
WP_069757319.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 5998.1e-77
WP_137232217.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 5999.3e-77
WP_097964273.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 5981.1e-76
WP_199941710.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 5981.2e-76

PSORT result

LocalizationCertaintyPSORT said
Not Clear