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IDSGR_5974 TypeCDS
From6987714 nt length573
To6988286 aa length190
Genesig54 pI11.12
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20144
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6785 putative RNA polymerase ECF-subfamily sigma factor1248.0e-30
coelSCO1564 putative RNA polymerase sigma factor1552.0e-39
samSAM23877_1619 RNA polymerase sigma factor1496.0e-47
kanCP970_35975 sigma-70 family RNA polymerase sigma factor1576.0e-50
scabSCAB74361 putative RNA polymerase sigma factor1541.0e-38

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result

no hits.

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012381647.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 5201.4e-64
WP_003970284.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 5167.7e-64
WP_215110154.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 4959.0e-61
WP_217230016.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 4941.5e-60
WP_097936828.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 4914.2e-60
WP_097923895.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 4905.6e-60
WP_097914904.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 4897.3e-60
WP_219609065.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 4871.6e-59
WP_007445885.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 4871.7e-59
WP_073745648.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 4871.9e-59

PSORT result

LocalizationCertaintyPSORT said
Not Clear