| ID | SGR_6013
| Type | CDS
|
| From | 7030740
| nt length | 594
|
| To | 7031333
| aa length | 197
|
| Gene | pdx2
| pI | 4.93
|
| Definition | putative glutamine amidotransferase
| M.W (Da) | 20912
|
| Note |
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_6831 putative pyridoxine biosynthesis protein (glutamine amidotransferase) | 307 | 7.0e-85
|
| coel | SCO1522 hypothetical protein | 329 | 1.0e-91
|
| sam | SAM23877_1573 Glutamine amidotransferase subunit PdxT | 344 | 4.0e-123
|
| kan | CP970_36240 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | 338 | 1.0e-120
|
| scab | SCAB74851 putative pyridoxine biosynthesis protein (glutamine amidotransferase) | 334 | 6.0e-93
|
| sace | SACE_2017 SNO glutamine amidotransferase | 220 | 1.0e-58
|
| nfar | nfa37030 putative amidotransferase | 224 | 3.0e-60
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SNO | 1 | SNO glutamine amidotransferase family | 9-193 | 195.9 | 5.1e-58
|
| GATase_3 | 1 | CobB/CobQ-like glutamine amidotransferase domain | 28-108 | 44.0 | 1.7e-11
|
| Peptidase_S51 | 1 | Peptidase family S51 | 38-92 | 26.1 | 5.2e-06
|
| GATase | 1 | Glutamine amidotransferase class-I | 38-189 | 26.0 | 6e-06
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
|
| 923 | 1.2e-125 |
| WP_012381670.1 | MULTISPECIES: pyridoxal 5'-phosphate synthase glutaminase su...
| 923 | 1.2e-125 |
| WP_003970326.1 | MULTISPECIES: pyridoxal 5'-phosphate synthase glutaminase su...
| 920 | 3.3e-125 |
| WP_164361395.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 918 | 6.8e-125 |
| WP_161185934.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 917 | 9.5e-125 |
| WP_093563924.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 917 | 9.7e-125 |
| WP_097869223.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 909 | 1.6e-123 |
| WP_164222092.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 909 | 1.7e-123 |
| WP_164256965.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 909 | 1.7e-123 |
| WP_069757029.1 | MULTISPECIES: pyridoxal 5'-phosphate synthase glutaminase su...
| 908 | 2.5e-123 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|