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IDSGR_6056 TypeCDS
From7078195 nt length273
To7078467 aa length90
GenerpoZ pI4.38
Definitionputative RNA polymerase omega subunit M.W (Da)9624
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6872 RNA polymerase omega subunit1564.0e-40
coelSCO1478 putative RNA polymerase omega subunit1773.0e-46
samSAM23877_1530 DNA-directed RNA polymerase subunit omega1771.0e-60
kanCP970_36475 DNA-directed RNA polymerase subunit omega1772.0e-60
scabSCAB75281 RNA polymerase omega subunit1742.0e-45
saceSACE_2101 DNA-directed RNA polymerase subunit omega1204.0e-29
nfarnfa36150 putative RNA polymerase omega subunit1151.0e-27

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb61RNA polymerase Rpb618-8054.57.1e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003970369.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4575.2e-58
WP_030610454.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4567.1e-58
WP_030355514.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4541.4e-57
WP_028814064.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4531.9e-57
SCD86726.1 DNA-directed RNA polymerase subunit omega [Streptomyces sp. Dval... 4562.0e-57
NDZ80301.1 DNA-directed RNA polymerase subunit omega [Streptomyces sp. SID10... 4532.0e-57
WP_067276962.1 DNA-directed RNA polymerase subunit omega [Streptomyces jedd... 4532.0e-57
WP_006382157.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4522.5e-57
WP_018564174.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4522.9e-57
WP_202202416.1 DNA-directed RNA polymerase subunit omega [Streptomyces spor... 4523.0e-57

PSORT result

LocalizationCertaintyPSORT said
Not Clear