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IDSGR_6228 TypeCDS
From7401916 nt length693
To7402608 aa length230
Genesig10 pI11.73
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)24833
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_898 putative RNA polymerase ECF-subfamily sigma factor1762.0e-45
coelSCO0864 probable ECF-family sigma factor.1971.0e-51
samSAM23877_0552 ECF RNA polymerase sigma factor SigC1862.0e-60
kanCP970_00620 sigma-70 family RNA polymerase sigma factor1971.0e-64
scabSCAB41571 putative RNA polymerase sigma factor2032.0e-53
saceSACE_6625 RNA polymerase sigma factor1785.0e-46

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4158-21052.82e-14

Sigma70_r21Sigma-70 region 262-12746.62e-12

Sigma70_ECF1ECF sigma factor43-21532.28.1e-08

Sigma70_r41Sigma-70, region 4163-21029.14.8e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_042498899.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8334.3e-111
BAG23057.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces... 8336.8e-111
WP_032774014.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8317.6e-111
EGE45868.1 RNA polymerase, sigma-24 subunit, ECF subfamily [Streptomyces sp.... 8322.5e-110
SBU95635.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces sp. ... 8322.5e-110
WP_203639002.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 7586.7e-100
NEB56093.1 sigma-70 family RNA polymerase sigma factor [Streptomyces griseus... 7551.4e-99
GGP67062.1 RNA polymerase sigma factor [Streptomyces sindenensis] 7437.8e-97
WP_189526991.1 sigma-70 family RNA polymerase sigma factor [Streptomyces si... 7371.5e-96
WP_069753065.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 7266.9e-95

PSORT result

LocalizationCertaintyPSORT said
Not Clear