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IDSGR_6264 TypeCDS
From7444724 nt length885
To7445608 aa length294
Genesig55 pI5.54
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)32127
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7068 putative RNA polymerase ECF-subfamily sigma factor3917.0e-110
coelSCO1263 putative ECF-sigma factor4101.0e-115
samSAM23877_1350 ECF RNA polymerase sigma factor SigJ4132.0e-147
kanCP970_40800 RNA polymerase sigma-70 factor3995.0e-142
scabSCAB78001 putative RNA polymerase sigma factor4248.0e-120
saceSACE_4776 sigma factor, sigma 70 type, group 4 (ECF)2523.0e-68
nfarnfa22150 putative sigma factor2384.0e-64

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 210-7464.54.9e-18

Sigma70_r4_21Sigma-70, region 4112-16250.11.5e-13

Sigma70_r41Sigma-70, region 4116-16234.01.3e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012381827.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 13840.0e+00
WP_093683525.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 13800.0e+00
WP_219206780.1 RNA polymerase sigma factor SigJ [Streptomyces griseus] >lcl... 13780.0e+00
WP_030704315.1 RNA polymerase sigma factor SigJ [Streptomyces griseus] 13750.0e+00
WP_093565865.1 RNA polymerase sigma factor SigJ [Streptomyces sp. OspMP-M43... 13710.0e+00
WP_003970582.1 MULTISPECIES: RNA polymerase sigma factor SigJ [unclassified... 13680.0e+00
WP_030623907.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 13140.0e+00
WP_030081266.1 RNA polymerase sigma factor SigJ [Streptomyces baarnensis] 13080.0e+00
WP_193464131.1 RNA polymerase sigma factor SigJ [Streptomyces griseus] >dbj... 13080.0e+00
WP_137231428.1 MULTISPECIES: RNA polymerase sigma factor SigJ [unclassified... 13080.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear