SGR_6652

ID SGR_6652 Type CDS
From 7946491 nt length 882
To 7945610 aa length 293
Gene crtS pI 4.7
Definition RNA polymerase sigma factor M.W (Da) 32373
Note AseI frg. G
SignalP v.4.0 Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*

Reciprocally best hit to

Score

E-value

Pfam search result

Model	No.	Description	Position (aa)	Score	E-value
Sigma70_r4	1	Sigma-70, region 4	238-286	69.1	1.5e-19
Sigma70_r2	1	Sigma-70 region 2	65-135	60.1	1.2e-16
Sigma70_r3	1	Sigma-70 region 3	145-198	38.7	7.3e-10
Sigma70_r4_2	1	Sigma-70, region 4	237-285	35.0	7.3e-09

BLAST search result (top 10 hits)

ID	Description	Score	E-value
WP_003970969.1	MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces...	1443	0.0e+00
WP_161184760.1	RNA polymerase sigma factor SigF [Streptomyces sp. SID724] >...	1439	0.0e+00
WP_010061683.1	MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces...	1413	0.0e+00
WP_097887128.1	RNA polymerase sigma factor SigF [Streptomyces sp. st140]	1411	0.0e+00
WP_073823308.1	RNA polymerase sigma factor SigF [Streptomyces sp. CB02130] ...	1410	0.0e+00
WP_030713022.1	MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces...	1410	0.0e+00
WP_205086163.1	RNA polymerase sigma factor SigF [Streptomyces sp. RHZ10] >l...	1410	0.0e+00
WP_225053360.1	RNA polymerase sigma factor SigF [Streptomyces sp. 7G] >lcl	1409	0.0e+00
WP_032788784.1	MULTISPECIES: RNA polymerase sigma factor SigF [unclassified...	1408	0.0e+00
WP_097992631.1	RNA polymerase sigma factor SigF [Streptomyces sp. f51]	1408	0.0e+00

PSORT result

Localization	Certainty	PSORT said
Not Clear

ID	SGR_6652	Type	CDS
From	7946491	nt length	882
To	7945610	aa length	293
Gene	crtS	pI	4.7
Definition	RNA polymerase sigma factor	M.W (Da)	32373
Note		AseI frg.	G
SignalP v.4.0	Non-secretory protein \| plot	Category