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IDSGR_6932 TypeCDS
From8323187 nt length1146
To8322042 aa length381
Genesig12 pI6.44
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)41210
Note AseI frg.G
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_961 putative RNA polymerase ECF-subfamily sigma factor5309.0e-152
coelSCO4452 hypothetical protein5562.0e-159
samSAM23877_0654 hypothetical protein5760.0e+00
kanCP970_42320 RNA polymerase subunit sigma-245380.0e+00
scabSCAB87051 putative RNA polymerase ECF-subfamily sigma factor5662.0e-162
saceSACE_6258 RNA polymerase sigma factor5776.0e-166
nfarnfa28080 putative sigma factor4844.0e-138

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 25-7037.71.1e-09

Sigma70_r4_21Sigma-70, region 498-14833.22.7e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012382327.1 MULTISPECIES: RNA polymerase sigma24 factor [Streptomyces] >... 16940.0e+00
WP_003971254.1 MULTISPECIES: RNA polymerase sigma24 factor [unclassified St... 16870.0e+00
WP_219207067.1 RNA polymerase subunit sigma-24 [Streptomyces griseus] >lcl 16870.0e+00
WP_093685337.1 MULTISPECIES: RNA polymerase subunit sigma-24 [unclassified ... 16750.0e+00
WP_164363979.1 RNA polymerase subunit sigma-24 [Streptomyces griseus] >gb 16710.0e+00
WP_030703448.1 RNA polymerase sigma24 factor [Streptomyces griseus] 16700.0e+00
WP_073743594.1 RNA polymerase subunit sigma-24 [Streptomyces sp. CB02115] >... 15830.0e+00
WP_097963316.1 RNA polymerase subunit sigma-24 [Streptomyces sp. or20] 15800.0e+00
WP_097933854.1 MULTISPECIES: RNA polymerase subunit sigma-24 [unclassified ... 15740.0e+00
WP_219577332.1 RNA polymerase subunit sigma-24 [Streptomyces anulatus] >gb 15730.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear