-- | --

IDSGR_718 TypeCDS
From849768 nt length636
To850403 aa length211
Genesig56 pI11.29
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23466
Note AseI frg.L
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7292 putative RNA polymerase ECF-subfamily sigma factor1747.0e-45
coelSCO0942 putative RNA polymerase sigma factor1993.0e-52
samSAM23877_6598 putative RNA polymerase sigma factor2091.0e-69
kanCP970_26950 sigma-70 family RNA polymerase sigma factor1551.0e-48
scabSCAB11621 putative RNA polymerase ECF-subfamily sigma factor1992.0e-52
saceSACE_5521 RNA polymerase, sigma-24 subunit, ECF subfamily1123.0e-26
nfarnfa55120 putative sigma factor1208.0e-29

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 238-10457.67.4e-16

Sigma70_r41Sigma-70, region 4139-18441.94.8e-11

Sigma70_r4_21Sigma-70, region 4133-17840.31.6e-10

Sigma70_ECF1ECF sigma factor88-18022.67.1e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
BAG17547.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces... 8843.1e-119
WP_003964598.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8484.5e-114
WP_164360851.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gr... 8407.6e-113
WP_098011164.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8215.2e-110
WP_215110285.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8207.8e-110
WP_073803270.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8181.5e-109
WP_137228181.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8172.1e-109
WP_206979131.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8154.9e-109
WP_189432017.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 8155.1e-109
WP_030719176.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8155.3e-109

PSORT result

LocalizationCertaintyPSORT said
Not Clear